Plot gadget.fit object — plot.gadget.fit • gadgetplots

A wrapper function to plot the results from a gadget.fit object.

Usage

# S3 method for gadget.fit
plot(x, param = "annual", ...)

Arguments

x: A gadget fit object. See g3_fit.
param: Character defining the parameter to plot. See Details.
...: Additional parameters passed to the separate plotting functions.

Value

Single or a list of ggplot objects depending on the arguments.

Details

A wrapper to plot the results from a gadget.fit object. The function produces a different plots defined by param argument and additional arguments passed to the respective functions.

Valid param options are:

annual: Annual summary of central model data. Uses plot_annual
biomass: Stock biomass. Uses plot_biomass
total: Stock biomass with total. Uses plot_biomass(..., total = TRUE)
abundance: Stock abundance. Uses plot_biomass(..., biomass = FALSE)
ssb: Spawning stock biomass. Uses plot_ssb
rec: Recruitment. Uses plot_rec
f: Fishing mortality. Uses plot_f
catch: Catches by stock. Uses plot_catch(..., type = "stock")
catch: Catches by fleet. Uses plot_catch(..., type = "fleet")
hr: Harvest rate. Uses plot_catch(..., type = "hr")
si: Survey indices. Uses plot_si
catchdist: Catch distribution comparison to data. Uses plot_catchdist
stockdist: Stock distribution comparison to data. Uses plot_stockdist
stockcomp: Model stock composition. Uses plot_stockcomp
suitablity: Suitability (fleet selection). Uses plot_suitability
growth: Average length by age. Uses plot_growth
agelength: Age-length (growth parameter) fit. Uses plot_agelength
agecomp: Age composition. Uses plot_agecomp
resid: Residuals. Uses plot_resid
likelihood: Likelihood scores. Uses plot_likelihood
weighted: Weighted likelihood scores. Uses plot_likelihood(..., type = "weighted")
pie: Proportion of summed weighted likelihood scores. Uses plot_likelihood(..., type = "pie")
weight: Parameter component weights
params: Parameter values relative to their boundaries