stock.h

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#ifndef stock_h
#define stock_h
 
#include "areatime.h"
#include "agebandmatrix.h"
#include "agebandmatrixratioptrvector.h"
#include "base.h"
#include "conversionindex.h"
#include "stockptrvector.h"
#include "tagptrvector.h"
#include "commentstream.h"
 
class Stock;
class Keeper;
class NaturalMortality;
class Grower;
class InitialCond;
class Migration;
class Transition;
class PopPredator;
class StockPrey;
class Maturity;
class RenewalData;
class SpawnData;
class StrayData;
 
class Stock : public BaseClass {
public:
  Stock(CommentStream& infile, const char* givenname, const AreaClass* const Area,
    const TimeClass* const TimeInfo, Keeper* const keeper);
  Stock(const char* givenname);
  virtual ~Stock();
  virtual void calcNumbers(int area, const TimeClass* const TimeInfo);
  virtual void reducePop(int area, const TimeClass* const TimeInfo);
  virtual void Grow(int area, const AreaClass* const Area, const TimeClass* const TimeInfo);
  virtual void updateAgePart1(int area, const TimeClass* const TimeInfo);
  virtual void updateAgePart2(int area, const TimeClass* const TimeInfo);
  virtual void updateAgePart3(int area, const TimeClass* const TimeInfo);
  virtual void updatePopulationPart1(int area, const TimeClass* const TimeInfo);
  virtual void updatePopulationPart2(int area, const TimeClass* const TimeInfo);
  virtual void updatePopulationPart3(int area, const TimeClass* const TimeInfo);
  virtual void updatePopulationPart4(int area, const TimeClass* const TimeInfo);
  virtual void updatePopulationPart5(int area, const TimeClass* const TimeInfo);
  virtual void calcEat(int area, const AreaClass* const Area, const TimeClass* const TimeInfo);
  virtual void checkEat(int area, const TimeClass* const TimeInfo);
  virtual void adjustEat(int area, const TimeClass* const TimeInfo);
  virtual void Reset(const TimeClass* const TimeInfo);
  void Print(ofstream& outfile) const;
  virtual void Migrate(const TimeClass* const TimeInfo);
  void Add(const AgeBandMatrix& Addition, const ConversionIndex* const CI, int area, double ratio);
  void Add(const AgeBandMatrixRatioPtrVector& Addition, const ConversionIndex* const CI, int area, double ratio);
  StockPrey* getPrey() const;
  Migration* getMigration() const;
  PopPredator* getPredator() const;
  AgeBandMatrix& getCurrentALK(int area) { return Alkeys[this->areaNum(area)]; };
  AgeBandMatrix& getConsumptionALK(int area);
  const LengthGroupDivision* getLengthGroupDiv() const { return LgrpDiv; };
  void setStock(StockPtrVector& stockvec);
  int isBirthday(const TimeClass* const TimeInfo) const;
  int isEaten() const { return iseaten; };
  int doesSpawn() const { return doesspawn; };
  int doesStray() const { return doesstray; };
  int doesMove() const { return doesmove; };
  int doesEat() const { return doeseat; };
  int doesMature() const { return doesmature; };
  int doesRenew() const { return doesrenew; };
  int doesGrow() const { return doesgrow; };
  int doesMigrate() const { return doesmigrate; };
  int isTagged() const { return istagged; };
  void setTaggedStock() { istagged = 1; };
  void setTagged();
  int minAge() const { return Alkeys[0].minAge(); };
  int maxAge() const { return Alkeys[0].maxAge(); };
  double getTotalStockNumber(int area) const;
  double getTotalStockNumberAllAreas() const;
  double getTotalStockBiomass(int area) const;
  double getTotalStockBiomassAllAreas() const;
  double getWeightedStockBiomass(int area,const FormulaVector & parameters) const;
  double getWeightedStockBiomassAllAreas(const FormulaVector & parameters) const;
  const StockPtrVector& getMatureStocks();
  const StockPtrVector& getTransitionStocks();
  const StockPtrVector& getStrayStocks();
  void addTags(AgeBandMatrixPtrVector* tagbyagelength, Tags* newtag, double tagloss);
  void deleteTags(const char* tagname);
protected:
  AgeBandMatrixPtrVector Alkeys;
  AgeBandMatrixRatioPtrVector tagAlkeys;
  TagPtrVector allTags;
  TagPtrVector matureTags;
  TagPtrVector transitionTags;
  TagPtrVector strayTags;
  StrayData* stray;
  SpawnData* spawner;
  RenewalData* renewal;
  Maturity* maturity;
  Transition* transition;
  Migration* migration;
  StockPrey* prey;
  PopPredator* predator;
  InitialCond* initial;
  LengthGroupDivision* LgrpDiv;
  Grower* grower;
  NaturalMortality* naturalm;
  int doeseat;
  int doesmove;
  int iseaten;
  int doesspawn;
  int doesmature;
  int doesrenew;
  int doesgrow;
  int doesmigrate;
  int doesstray;
  int birthdate;
  int istagged;
  PopInfoMatrix tmpPopulation;
  PopInfoVector tmpMigrate;
};
 
#endif