This is the class used to calculate a likelihood score based on distribution data for different stocks sampled from the stocks caught by fleets. More...

#include <stockdistribution.h>

Inheritance diagram for StockDistribution:

Collaboration diagram for StockDistribution:

Public Member Functions
	StockDistribution (CommentStream &infile, const AreaClass const Area, const TimeClass const TimeInfo, double weight, const char *name)
	This is the StockDistribution constructor. More...

virtual	~StockDistribution ()
	This is the default StockDistribution destructor. More...

virtual void	addLikelihood (const TimeClass *const TimeInfo)
	This function will calculate the likelihood score for the StockDistribution component. More...

virtual void	Reset (const Keeper *const keeper)
	This function will reset the StockDistribution likelihood information. More...

virtual void	Print (ofstream &outfile) const
	This function will print the summary StockDistribution likelihood information. More...

virtual void	printSummary (ofstream &outfile)
	This function will print summary information from each StockDistribution likelihood calculation. More...

virtual void	printLikelihood (ofstream &outfile, const TimeClass *const TimeInfo)
	This function will print information from each StockDistribution calculation. More...

void	setFleetsAndStocks (FleetPtrVector &Fleets, StockPtrVector &Stocks)
	This will select the fleets and stocks required to calculate the StockDistribution likelihood score. More...

Public Member Functions inherited from Likelihood
	Likelihood (LikelihoodType T, double w, const char *givenname)
	This is the default Likelihood constructor. More...

virtual	~Likelihood ()
	This is the default Likelihood destructor. More...

virtual void	addLikelihoodKeeper (const TimeClass const TimeInfo, Keeper const keeper)
	This function will calculate the likelihood score for the current model after adjusting the parameters. More...

virtual void	Reset (const TimeClass *const TimeInfo)
	This function will reset the likelihood information. More...

double	getLikelihood () const
	This will return the weighted likelihood score for the likelihood component. More...

LikelihoodType	getType () const
	This will return the type of likelihood class. More...

double	getUnweightedLikelihood () const
	This will return the unweighted likelihood score for the likelihood component. More...

double	getWeight () const
	This will return the weight applied to the likelihood component. More...

Public Member Functions inherited from HasName
	HasName ()
	This is the default HasName constructor. More...

virtual	~HasName ()
	This is the default HasName destructor. More...

	HasName (const char *givenname)
	This is the HasName constructor for a specified name. More...

const char *	getName () const
	This will return a null terminated text string containing the name of the object. More...

Additional Inherited Members
Protected Attributes inherited from Likelihood
double	likelihood
	This stores the calculated score for the likelihood component. More...

double	weight
	This stores the weight to be applied to the likelihood component. More...

Detailed Description

This is the class used to calculate a likelihood score based on distribution data for different stocks sampled from the stocks caught by fleets.

This class calculates a likelihood score based on the difference between distribution data sampled from different stocks caught according to the model and that caught by fleets, according to the landings data. This is typically used to compare Gadget stocks that are based on the same species, but have differing biological properties (eg. immature and mature fish). The distribution data can either be aggregated into age groups (giving a distribution of length groups for each age), length groups (giving a distribution of age groups for each length) or into age-length groups. The model will calculate the distribution data for the stocks that are caught according to the model parameters, and aggregate this into the specified age and/or length groups. This distribution data is then compared to the corresponding data calculated from the landings data.

Constructor & Destructor Documentation

◆ StockDistribution()

StockDistribution::StockDistribution	(	CommentStream &	infile,
		const AreaClass *const	Area,
		const TimeClass *const	TimeInfo,
		double	weight,
		const char *	name
	)

This is the StockDistribution constructor.

Parameters

infile	is the CommentStream to read the StockDistribution data from
Area	is the AreaClass for the current model
TimeInfo	is the TimeClass for the current model
weight	is the weight for the likelihood component
name	is the name for the likelihood component

◆ ~StockDistribution()

StockDistribution::~StockDistribution ( )

virtual

This is the default StockDistribution destructor.

Member Function Documentation

◆ addLikelihood()

void StockDistribution::addLikelihood ( const TimeClass *const TimeInfo )

virtual

This function will calculate the likelihood score for the StockDistribution component.

Parameters

TimeInfo is the TimeClass for the current model

Implements Likelihood.

◆ Print()

void StockDistribution::Print ( ofstream & outfile ) const

virtual

This function will print the summary StockDistribution likelihood information.

Parameters

outfile is the ofstream that all the model information gets sent to

Implements Likelihood.

◆ printLikelihood()

void StockDistribution::printLikelihood	(	ofstream &	outfile,
		const TimeClass *const	TimeInfo
	)

virtual

This function will print information from each StockDistribution calculation.

Parameters

outfile	is the ofstream that all the model likelihood information gets sent to
TimeInfo	is the TimeClass for the current model

Reimplemented from Likelihood.

◆ printSummary()

void StockDistribution::printSummary ( ofstream & outfile )

virtual

This function will print summary information from each StockDistribution likelihood calculation.

Parameters

outfile is the ofstream that all the model likelihood information gets sent to

Reimplemented from Likelihood.

◆ Reset()

void StockDistribution::Reset ( const Keeper *const keeper )

virtual

This function will reset the StockDistribution likelihood information.

Parameters

keeper is the Keeper for the current model

Reimplemented from Likelihood.

◆ setFleetsAndStocks()

void StockDistribution::setFleetsAndStocks	(	FleetPtrVector &	Fleets,
		StockPtrVector &	Stocks
	)

virtual

This will select the fleets and stocks required to calculate the StockDistribution likelihood score.

Parameters

Fleets	is the FleetPtrVector of all the available fleets
Stocks	is the StockPtrVector of all the available stocks

Reimplemented from Likelihood.

The documentation for this class was generated from the following files:

src/include/stockdistribution.h
src/stockdistribution.cc

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ StockDistribution()

◆ ~StockDistribution()

Member Function Documentation

◆ addLikelihood()

◆ Print()

◆ printLikelihood()

◆ printSummary()

◆ Reset()

◆ setFleetsAndStocks()