Plot model biomass from a retrospective analysis
plot_retro.Rd
Plot model biomass from a retrospective analysis
Usage
plot_retro(
retro_fit,
var = "total.biomass",
by_stock = TRUE,
min_catch_length = NULL,
base_size = 8,
ncol = NULL
)
Arguments
- retro_fit
A list of
g3_fit
objects that differ in their terminal year, i.e. the result of a retrospective analysis. The first object should have no years removed and the objects should be sorted chronologically with increasing number of years removed.- var
Character argument defining the variable to plot. Only
"total.biomass"
and"hr"
are currently implemented.- by_stock
Logical indicating whether to produce plots by stock in addition to total biomass.
- min_catch_length
Numeric value defining the minimum catch length (size), which will be used to filter (
>=
) the model population before calculating harvest rates using catches. Combines all stocks. Turn of by setting toNULL
(default). Set to 0 to get HR for the entire model population. See Details.- base_size
Base size parameter for ggplot. See ggtheme.
- ncol
Number of columns to be used in the plot.
Value
A ggplot object.