gadget2/reference/sibylengthonstep_8h_source.html

 #ifndef sibylengthonstep_h

 #define sibylengthonstep_h


 #include "sionstep.h"


 class SIByLengthOnStep : public SIOnStep {

 public:

   SIByLengthOnStep(CommentStream& infile, const IntMatrix& areas,

     const DoubleVector& lengths, const CharPtrVector& areaindex,

     const CharPtrVector& lenindex, const TimeClass* const TimeInfo,

     const char* datafilename, const char* givenname, int bio);

   virtual ~SIByLengthOnStep();

   virtual void Sum(const TimeClass* const TimeInfo);

   virtual void setFleetsAndStocks(FleetPtrVector& Fleets, StockPtrVector& Stocks);

   virtual void Print(ofstream& outfile) const { aggregator->Print(outfile); };

 protected:

   StockAggregator* aggregator;

 };


 #endif

CharPtrVector
This class implements a dynamic vector of char values.
Definition: charptrvector.h:8

CommentStream
This is the class used to strip comments (and whitespace) from any input stream.
Definition: commentstream.h:40

DoubleVector
This class implements a dynamic vector of double values.
Definition: doublevector.h:11

FleetPtrVector
This class implements a dynamic vector of Fleet values.
Definition: fleetptrvector.h:10

IntMatrix
This class implements a dynamic vector of IntVector values.
Definition: intmatrix.h:10

SIByLengthOnStep
This is the class used to calculate a likelihood score by fitting the model population to length base...
Definition: sibylengthonstep.h:10

SIByLengthOnStep::Sum
virtual void Sum(const TimeClass *const TimeInfo)
This function will sum the survey index by length data.
Definition: sibylengthonstep.cc:64

SIByLengthOnStep::aggregator
StockAggregator * aggregator
This is the StockAggregator used to collect information about the relevant stocks for the survey inde...
Definition: sibylengthonstep.h:47

SIByLengthOnStep::SIByLengthOnStep
SIByLengthOnStep(CommentStream &infile, const IntMatrix &areas, const DoubleVector &lengths, const CharPtrVector &areaindex, const CharPtrVector &lenindex, const TimeClass *const TimeInfo, const char *datafilename, const char *givenname, int bio)
This is the SIByLengthOnStep constructor.
Definition: sibylengthonstep.cc:9

SIByLengthOnStep::Print
virtual void Print(ofstream &outfile) const
This function will print the SIByLengthOnStep information.
Definition: sibylengthonstep.h:47

SIByLengthOnStep::setFleetsAndStocks
virtual void setFleetsAndStocks(FleetPtrVector &Fleets, StockPtrVector &Stocks)
This will select the fleets and stocks required to calculate the survey index likelihood score.
Definition: sibylengthonstep.cc:25

SIByLengthOnStep::~SIByLengthOnStep
virtual ~SIByLengthOnStep()
This is the default SIByLengthOnStep destructor.
Definition: sibylengthonstep.cc:20

SIOnStep
This is the base class used to calculate a likelihood score by fitting a regression line to the model...
Definition: sionstep.h:29

StockAggregator
This is the class used to aggregate stock information.
Definition: stockaggregator.h:14

StockAggregator::Print
void Print(ofstream &outfile) const
This will print the aggregator information to the ofstream specified.
Definition: stockaggregator.cc:34

StockPtrVector
This class implements a dynamic vector of Stock values.
Definition: stockptrvector.h:10

TimeClass
This is the class used to store information about the timesteps used for the current model.
Definition: areatime.h:87

sionstep.h