gadget2/reference/sibyeffortonstep_8h_source.html

 #ifndef sibyeffortonstep_h

 #define sibyeffortonstep_h


 #include "sionstep.h"

 #include "fleeteffortaggregator.h"


 class SIByEffortOnStep : public SIOnStep {

 public:

   SIByEffortOnStep(CommentStream& infile, const IntMatrix& areas,

     const CharPtrVector& areaindex, const CharPtrVector& fleetindex,

     const TimeClass* const TimeInfo, const char* datafilename, const char* givenname, int bio);

   virtual ~SIByEffortOnStep();

   virtual void Sum(const TimeClass* const TimeInfo);

   virtual void setFleetsAndStocks(FleetPtrVector& Fleets, StockPtrVector& Stocks);

   virtual void Print(ofstream& outfile) const { aggregator->Print(outfile); };

 protected:

   FleetEffortAggregator* aggregator;

   const DoubleMatrix* dptr;

 };


 #endif

CharPtrVector
This class implements a dynamic vector of char values.
Definition: charptrvector.h:8

CommentStream
This is the class used to strip comments (and whitespace) from any input stream.
Definition: commentstream.h:40

DoubleMatrix
This class implements a dynamic vector of DoubleVector values.
Definition: doublematrix.h:11

FleetEffortAggregator
This is the class used to aggregate fleet catch information.
Definition: fleeteffortaggregator.h:16

FleetEffortAggregator::Print
void Print(ofstream &outfile) const
This will print the aggregator information to the ofstream specified.
Definition: fleeteffortaggregator.cc:37

FleetPtrVector
This class implements a dynamic vector of Fleet values.
Definition: fleetptrvector.h:10

IntMatrix
This class implements a dynamic vector of IntVector values.
Definition: intmatrix.h:10

SIByEffortOnStep
This is the class used to calculate a likelihood score by fitting the model population to effort base...
Definition: sibyeffortonstep.h:11

SIByEffortOnStep::~SIByEffortOnStep
virtual ~SIByEffortOnStep()
This is the default SIByEffortOnStep destructor.
Definition: sibyeffortonstep.cc:14

SIByEffortOnStep::aggregator
FleetEffortAggregator * aggregator
This is the FleetEffortAggregator used to collect information about the relevant fleets for the surve...
Definition: sibyeffortonstep.h:46

SIByEffortOnStep::Sum
virtual void Sum(const TimeClass *const TimeInfo)
This function will sum the survey index by fleet length data.
Definition: sibyeffortonstep.cc:27

SIByEffortOnStep::setFleetsAndStocks
virtual void setFleetsAndStocks(FleetPtrVector &Fleets, StockPtrVector &Stocks)
This will select the fleets and stocks required to calculate the survey index likelihood score.
Definition: sibyeffortonstep.cc:19

SIByEffortOnStep::dptr
const DoubleMatrix * dptr
This is the DoubleMatrix used to temporarily store the information returned from the aggregatation fu...
Definition: sibyeffortonstep.h:55

SIByEffortOnStep::SIByEffortOnStep
SIByEffortOnStep(CommentStream &infile, const IntMatrix &areas, const CharPtrVector &areaindex, const CharPtrVector &fleetindex, const TimeClass *const TimeInfo, const char *datafilename, const char *givenname, int bio)
This is the SIByEffortOnStep constructor.
Definition: sibyeffortonstep.cc:8

SIByEffortOnStep::Print
virtual void Print(ofstream &outfile) const
This function will print the SIByEffortOnStep information.
Definition: sibyeffortonstep.h:46

SIOnStep
This is the base class used to calculate a likelihood score by fitting a regression line to the model...
Definition: sionstep.h:29

StockPtrVector
This class implements a dynamic vector of Stock values.
Definition: stockptrvector.h:10

TimeClass
This is the class used to store information about the timesteps used for the current model.
Definition: areatime.h:87

fleeteffortaggregator.h

sionstep.h