gadget2/reference/sibyageonstep_8h_source.html

 #ifndef sibyageonstep_h

 #define sibyageonstep_h


 #include "sionstep.h"


 class SIByAgeOnStep : public SIOnStep {

 public:

   SIByAgeOnStep(CommentStream& infile, const IntMatrix& areas,

     const IntMatrix& ages, const CharPtrVector& areaindex,

     const CharPtrVector& ageindex, const TimeClass* const TimeInfo,

     const char* datafilename, const char* givenname, int bio);

   virtual ~SIByAgeOnStep();

   virtual void Sum(const TimeClass* const TimeInfo);

   virtual void setFleetsAndStocks(FleetPtrVector& Fleets, StockPtrVector& Stocks);

   virtual void Print(ofstream& outfile) const { aggregator->Print(outfile); };

 protected:

   StockAggregator* aggregator;

 };


 #endif

CharPtrVector
This class implements a dynamic vector of char values.
Definition: charptrvector.h:8

CommentStream
This is the class used to strip comments (and whitespace) from any input stream.
Definition: commentstream.h:40

FleetPtrVector
This class implements a dynamic vector of Fleet values.
Definition: fleetptrvector.h:10

IntMatrix
This class implements a dynamic vector of IntVector values.
Definition: intmatrix.h:10

SIByAgeOnStep
This is the class used to calculate a likelihood score by fitting the model population to age based s...
Definition: sibyageonstep.h:10

SIByAgeOnStep::setFleetsAndStocks
virtual void setFleetsAndStocks(FleetPtrVector &Fleets, StockPtrVector &Stocks)
This will select the fleets and stocks required to calculate the survey index likelihood score.
Definition: sibyageonstep.cc:22

SIByAgeOnStep::SIByAgeOnStep
SIByAgeOnStep(CommentStream &infile, const IntMatrix &areas, const IntMatrix &ages, const CharPtrVector &areaindex, const CharPtrVector &ageindex, const TimeClass *const TimeInfo, const char *datafilename, const char *givenname, int bio)
This is the SIByAgeOnStep constructor.
Definition: sibyageonstep.cc:9

SIByAgeOnStep::Sum
virtual void Sum(const TimeClass *const TimeInfo)
This function will sum the survey index by age data.
Definition: sibyageonstep.cc:71

SIByAgeOnStep::~SIByAgeOnStep
virtual ~SIByAgeOnStep()
This is the default SIByAgeOnStep destructor.
Definition: sibyageonstep.cc:17

SIByAgeOnStep::aggregator
StockAggregator * aggregator
This is the StockAggregator used to collect information about the relevant stocks for the survey inde...
Definition: sibyageonstep.h:47

SIByAgeOnStep::Print
virtual void Print(ofstream &outfile) const
This function will print the SIByAgeOnStep information.
Definition: sibyageonstep.h:47

SIOnStep
This is the base class used to calculate a likelihood score by fitting a regression line to the model...
Definition: sionstep.h:29

StockAggregator
This is the class used to aggregate stock information.
Definition: stockaggregator.h:14

StockAggregator::Print
void Print(ofstream &outfile) const
This will print the aggregator information to the ofstream specified.
Definition: stockaggregator.cc:34

StockPtrVector
This class implements a dynamic vector of Stock values.
Definition: stockptrvector.h:10

TimeClass
This is the class used to store information about the timesteps used for the current model.
Definition: areatime.h:87

sionstep.h